Mirny Lab

Tools

Open 2C & MirnyLab on GitHub

https://github.com/mirnylab

OpenTrajectoryAnalysis

https://github.com/OpenTrajectoryAnalysis

Polymer Simulation Library

polychrom

Protein Knots Server

knots.mit.edu

Our new suite of Hi-C analysis tools on GitHub:

Modular Contact Mapping and Filtering Library

pairtools

Library for the .cool Contact Matrix File Format

cooler

Scalable Hi-C Data Processing Workflow

distiller

Legacy Libraries:

Polymer Simulation Library

openmm-polymer

Hi-C Data Analysis Library

hiclib