Lab Members

Ed Banigan
Research Scientist
University of Pennsylvania, Ph.D.
Ed is interested in the physical mechanisms of nuclear organization, shape, and mechanics, and how chromatin polymer physics underlies these critical cellular properties. He integrates theory, simulation, and bioinformatic analysis to develop biophysical models to understand cell and molecular biological observations.
ebanigan [at] mit [dot] edu

Aleksandra (Sasha) Galitsyna
Postdoctoral Researcher
Skolkovo Institute of Science and Technology, Ph.D. in Life Sciences
Aleksandra is a computational biologist focused on the intersection of polymer biophysics and chromatin biology, with a strong genomics perspective. A strong advocate for the power of the scientific community, Aleksandra believes teaching and sharing knowledge are absolutely vital. Inspired by regulation of cell commitment and decision-making.
galitsyn [at] mit [dot] edu

Timothy Földes
Postdoctoral Researcher
Sorbonne Université, Ph.D. Physics
Tim approaches the mysteries of chromatin architecture with the eye of a polymer physicist. Currently, he applies analytical approaches and simulations to study the kinetics of cohesin-mediated chromatin contacts and their implication for enhancer-promoter communication. When he’s not solving equations at his desk, you’ll find him brainstorming at the whiteboard with his colleagues.
foldes [at] mit [dot] edu

Irina Zhegalova
Postdoctoral Researcher
Kharkevich Institute, Ph.D.
Irina is studying the role of non-coding RNAs in shaping chromatin organization. She utilizes bioinformatics analysis of Hi-C data to investigate these phenomena and is eager to expand her expertise by learning polymer simulations.
irzhe [at] mit [dot] edu

Emily Navarrete
Graduate Student
MIT Biology, Ph.D. Student
Emily is studying active chromatin organization at length-scales ranging from enhancers and promoters to compartments. She is co-mentored by Job Dekker at the University of Massachusetts Medical School.
emilynav [at] mit [dot] edu

Henrik Dahl Pinholt
Graduate Student
MIT Physics, Ph.D. Student
Henrik is interested in how cells make decisions with special emphasis on enhancer-mediated gene activation and DNA repair. His main tools have been inference on single-particle tracking, analytical methods in non-equilibrium statistical mechanics, and large-scale polymer simulations.
pinholt [at] mit [dot] edu

Maxim Imakaev
Infrastructure Administrator
MIT, Ph.D
Max is the Mirny Castle’s Calcifer, ensuring our research hearth never falters. He’s responsible for the design, construction, and maintenance of our computational infrastructure – he keeps the servers running and the data flowing. But Max’s contributions go far beyond that; his experience and vision have been instrumental in shaping the lab’s path and achievements. Lately, he’s been building Manta, a machine-learning tool to further our research. And unlike Calcifer, Max is not bound to any location and is often in touch from his global adventures.
[at] mit [dot] edu

Flavia Corsi
Postdoctoral Fellow
Flavia aims to understand the mechanisms that govern the three-dimensional organization of sister chromatids using biophysical models.

Katrina Norman
Laboratory Operations Coordinator
New School University/ Parsons School of Design
Katrina joined us in 2022 and quickly became an integrated part of the lab. She keeps the wheels turning on the machine that is the Mirny Lab. Katrina believes in a positive and productive environment where lab members can focus on their research. She also enjoys welcoming new lab members and visitors to Boston.
pkatrina [at] mit [dot] edu

Tingran Wang
Rotation Student, MIT Physics
BS, University of Chicago
Before switching to biology, Tingran was an experimental quantum physicist using lasers and ultra-cold atoms to study degenerate quantum gases. Now attracted by the sophisticated phenomenologies in the world of 3D genome, Tingran is studying how stretched chromatin fibers in vivo can inform us more about both their polymer properties and loop-extrusion dynamics, using polymer simulation and statistical mechanics.

E. M. Breville
Wet-Lab Experimentalist
MIT Physics (Ph.D./M.D./J.D. Harvard Biophysics/HST)
I joined MirnyLab in 2014, taking over daily caffeination duties from Espresso. I continue my predecessor’s research directions, including the long-term study of caffeination on h. sapiens. While I am currently the only wet-lab experimentalist in the group, I find the theorists easy to collaborate with and wonderfully open-minded.
espresso [at] mit [dot] edu

Andy
Visiting Canine
Emily’s Home for Adorable Doggos
Andy’s research passion lies at the intersection of gustatory sensation and reward processing. He’s eager to understand how the epigenetic modifications of taste receptor cells in the tongue, particularly those expressing umami receptors, are involved in the signaling cascades that ultimately activate the brain’s reward circuitry,
Alumni
Graduate Students
Trainee Name | Training Period (Years) | Current Position | More info |
---|---|---|---|
Simon Grosse-Holz | 2017–2023 (6 years) | LBE Postdoctoral Fellow, Max Planck Institute of Cell Biology and Genetics | ![]() |
Sameer Abraham | 2017–2023 (6 years) | Scientist, Chroma Medicine | ![]() |
Nezar Abdennur | 2012–2022 (10 years) | Assistant Professor, University of Massachusetts Medical School | Abdennur Lab |
Carino Gurjao | ~2016–2022 (6 years) | Assistant Professor, IRIC, Université de Montréal | Gurjao Lab |
Jeremy Owen | 2019–2022 (3 years) | Postdoctoral Fellow, Princeton University | ![]() |
Hugo Brandão | 2016–2021 (5 years) | Staff Scientist, Illumina | ![]() |
Martin Falk | 2014–2019 (5 years) | Schmidt AI+Science Fellow, University of Chicago | ![]() |
Anton Goloborodko | 2011–2018 (7 years) | Group Leader, IMBA, Vienna, Austria | Goloborodko Lab |
Christopher McFarland | 2008–2015 (7 years) | Assistant Professor, Case Western Reserve University (Genetics & Genome Sciences) | McFarland Lab |
Geoffrey Fudenberg | 2008–2015 (7 years) | Assistant Professor, University of Southern California | Fudenberg Lab |
Zeba Wunderlich | 2003 – 2008 (5 years) | Associate Professor of Biology at Boston University | Wunderlich Lab |
Jason Leith | 2005 – 2011 (6 years) | PsyD student at The Wright Institute | ![]() |
Anahita Tafvizi | 2004 – 2010 (6 years) | Chief Data & Analytics Officer , Snowflake | ![]() |
Carlos Gómez-Uribe | 2004 – 2008 (4 years) | Member of Technical Staff, Anthropic | ![]() |
Juhi Chandalia | 2003 – 2005 (2 years) | Staff Data Scientist, Intuit | ![]() |
Joe Levine | 2003 – 2005 (2 years) | Principal,1729 Consulting LLC | ![]() |
Michael Slutsky | 2002 – 2005 (3 years) | Theory Group Manager at Quantum Source Labs | ![]() |
Postdoc
Undergraduates
Trainee Name | Training Period | Current Position | More info |
---|---|---|---|
Sofya Gaydukova | 2023 – 2024 | BU PHD student | Fiszbein Lab |
Joseph Finkelberg | 2023 – 2024 | BU PHD student | |
David Kanovich | Summer ’24 | Wesleyan University ‘28 | ![]() |
Konstantine Tchourine | 2011 | Postdoctoral Research Scientist | ![]() |
Ilya Rudkevich | Portfolio Manager and Partner at Statar Capital LLC | ![]() | |
Shankar Mukherji | Assistant Professor, Washington University in St. Louis | Mukherji Lab |
High Scool Mentees
